PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2616130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 265aa    MW: 29546.9 Da    PI: 5.4511
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2616130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-3188146259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY++eHnh+
  Lj4g3v2616130.1  88 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMLVVTYSSEHNHP 146
                      69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3280148IPR003657WRKY domain
SuperFamilySSF1182904.84E-2784148IPR003657WRKY domain
SMARTSM007741.8E-3787147IPR003657WRKY domain
PROSITE profilePS5081132.59288148IPR003657WRKY domain
PfamPF031061.3E-2689146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDSKFSNNRH RYINELLEED AEVAHHHQEN IADSPPSSTA FNIDGLVTSS STSSAKRSRR  60
AIQKRVVQIP IKETEGSRLK AENNTPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP  120
ARKQVERSRA DPTMLVVTYS SEHNHPWPVS RSNNQAKPAA KKPEPEPEPV EPEEKLEDLG  180
GENELGWLGV EMETASSAAA MLESPIMAPE FDEADVASVF LPMREEDELL FADLGELPEC  240
SAVFRHGLVD VRRRLATPWC GTTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19881481574WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.76140.0cell culture| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585175.11e-123PREDICTED: WRKY48 protein isoform X1
SwissprotQ9LP562e-76WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0B2SU031e-121A0A0B2SU03_GLYSO; Putative WRKY transcription factor 65
TrEMBLA0A0R4J3W01e-121A0A0R4J3W0_SOYBN; Uncharacterized protein
STRINGGLYMA08G12460.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-70WRKY DNA-binding protein 65